HumanMine: advanced data searching, analysis and cross-species comparison.	2022	Database	Lyne R, Bazaga A, Butano D, Contrino S, Heimbach J, et al.
Translating synthetic natural language to database queries with a polyglot deep learning framework.	2021	Scientific reports	Bazaga A, Gunwant N, Micklem G
Insights into olfactory ensheathing cell development from a laser-microdissection and transcriptome-profiling approach.	2020	Glia	Perera SN, Williams RM, Lyne R, Stubbs O, Buehler DP, et al.
InterMineR: an R package for InterMine databases.	2019	Bioinformatics	Kyritsis KA, Wang B, Sullivan J, Lyne R, Micklem G
Correction: esyN: Network Building, Sharing and Publishing.	2019	PloS one	Bean DM, Heimbach J, Ficorella L, Micklem G, Oliver SG, et al.
Encompassing new use cases - level 3.0 of the HUPO-PSI format for molecular interactions.	2018	BMC bioinformatics	Sivade Dumousseau M, Alonso-López D, Ammari M, Bradley G, Campbell NH, et al.
Comparative genomics of bdelloid rotifers: Insights from desiccating and nondesiccating species.	2018	PLoS biology	Nowell RW, Almeida P, Wilson CG, Smith TP, Fontaneto D, et al.
The InterMine Android app: Cross-organism genomic data in your pocket.	2018	F1000Research	Komkova D, Lyne R, Sullivan J, Yehudi Y, Micklem G
ComplexViewer: visualization of curated macromolecular complexes.	2017	Bioinformatics	Combe CW, Sivade MD, Hermjakob H, Heimbach J, Meldal BHM, et al.
Correction for Guo et al., "Poly(A) Signals Located near the 5' End of Genes Are Silenced by a General Mechanism That Prevents Premature 3'-End Processing".	2017	Molecular and cellular biology	Guo J, Garrett M, Micklem G, Brogna S
Empirical Bayes method for reducing false discovery rates of correlation matrices with block diagonal structure.	2017	BMC bioinformatics	Pacini C, Ajioka JW, Micklem G
Insights into electrosensory organ development, physiology and evolution from a lateral line-enriched transcriptome.	2017	eLife	Modrell MS, Lyne M, Carr AR, Zakon HH, Buckley D, et al.
Urinary Exosomes Contain MicroRNAs Capable of Paracrine Modulation of Tubular Transporters in Kidney.	2017	Scientific reports	Gracia T, Wang X, Su Y, Norgett EE, Williams TL, et al.
ThaleMine: A Warehouse for Arabidopsis Data Integration and Discovery.	2017	Plant & cell physiology	Krishnakumar V, Contrino S, Cheng CY, Belyaeva I, Ferlanti ES, et al.
Genomes of coral dinoflagellate symbionts highlight evolutionary adaptations conducive to a symbiotic lifestyle.	2016	Scientific reports	Aranda M, Li Y, Liew YJ, Baumgarten S, Simakov O, et al.
Cross-organism analysis using InterMine.	2015	Genesis (New York, N.Y. : 2000)	Lyne R, Sullivan J, Butano D, Contrino S, Heimbach J, et al.
Expression of multiple horizontally acquired genes is a hallmark of both vertebrate and invertebrate genomes.	2015	Genome biology	Crisp A, Boschetti C, Perry M, Tunnacliffe A, Micklem G
toxoMine: an integrated omics data warehouse for Toxoplasma gondii systems biology research.	2015	Database	Rhee DB, Croken MM, Shieh KR, Sullivan J, Micklem G, et al.
Araport: the Arabidopsis information portal.	2015	Nucleic acids research	Krishnakumar V, Hanlon MR, Contrino S, Ferlanti ES, Karamycheva S, et al.
InterMine: extensive web services for modern biology.	2014	Nucleic acids research	Kalderimis A, Lyne R, Butano D, Contrino S, Lyne M, et al.
esyN: network building, sharing and publishing.	2014	PloS one	Bean DM, Heimbach J, Ficorella L, Micklem G, Oliver SG, et al.
BioJS DAGViewer: A reusable JavaScript component for displaying directed graphs.	2014	F1000Research	Kalderimis A, Stepan R, Sullivan J, Lyne R, Lyne M, et al.
Identification of microRNAs in the coral Stylophora pistillata.	2014	PloS one	Liew YJ, Aranda M, Carr A, Baumgarten S, Zoccola D, et al.
Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals.	2013	BMC genomics	Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, et al.
Activity of a heptad of transcription factors is associated with stem cell programs and clinical outcome in acute myeloid leukemia.	2013	Blood	Diffner E, Beck D, Gudgin E, Thoms JA, Knezevic K, et al.
The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies.	2013	Journal of biomedical semantics	Katayama T, Wilkinson MD, Micklem G, Kawashima S, Yamaguchi A, et al.
metabolicMine: an integrated genomics, genetics and proteomics data warehouse for common metabolic disease research.	2013	Database	Lyne M, Smith RN, Lyne R, Aleksic J, Hu F, et al.
InterMOD: integrated data and tools for the unification of model organism research.	2013	Scientific reports	Sullivan J, Karra K, Moxon SA, Vallejos A, Motenko H, et al.
InterMine: a flexible data warehouse system for the integration and analysis of heterogeneous biological data.	2012	Bioinformatics	Smith RN, Aleksic J, Butano D, Carr A, Contrino S, et al.
Multiple functionally divergent and conserved copies of alpha tubulin in bdelloid rotifers.	2012	BMC evolutionary biology	Eyres I, Frangedakis E, Fontaneto D, Herniou EA, Boschetti C, et al.
Biochemical diversification through foreign gene expression in bdelloid rotifers.	2012	PLoS genetics	Boschetti C, Carr A, Crisp A, Eyres I, Wang-Koh Y, et al.
YeastMine--an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit.	2012	Database	Balakrishnan R, Park J, Karra K, Hitz BC, Binkley G, et al.
modMine: flexible access to modENCODE data.	2012	Nucleic acids research	Contrino S, Smith RN, Butano D, Carr A, Hu F, et al.
MicroRNAs dysregulated in breast cancer preferentially target key oncogenic pathways.	2011	Molecular bioSystems	Lim WK, Micklem G
The impact of quantitative optimization of hybridization conditions on gene expression analysis.	2011	BMC bioinformatics	Sykacek P, Kreil DP, Meadows LA, Auburn RP, Fischer B, et al.
Poly(A) signals located near the 5' end of genes are silenced by a general mechanism that prevents premature 3'-end processing.	2011	Molecular and cellular biology	Guo J, Garrett M, Micklem G, Brogna S
The modENCODE Data Coordination Center: lessons in harvesting comprehensive experimental details.	2011	Database	Washington NL, Stinson EO, Perry MD, Ruzanov P, Contrino S, et al.
Identification of functional elements and regulatory circuits by Drosophila modENCODE.	2010	Science	Roy S, Ernst J, Kharchenko PV, Kheradpour P, Negre N, et al.
Integrative analysis of the Caenorhabditis elegans genome by the modENCODE project.	2010	Science	Gerstein MB, Lu ZJ, Van Nostrand EL, Cheng C, Arshinoff BI, et al.
Identification and analysis of serpin-family genes by homology and synteny across the 12 sequenced Drosophilid genomes.	2009	BMC genomics	Garrett M, Fullaondo A, Troxler L, Micklem G, Gubb D
Unlocking the secrets of the genome.	2009	Nature	Celniker SE, Dillon LA, Gerstein MB, Gunsalus KC, Henikoff S, et al.
Phylogenetic and genomewide analyses suggest a functional relationship between kayak, the Drosophila fos homolog, and fig, a predicted protein phosphatase 2c nested within a kayak intron.	2007	Genetics	Hudson SG, Garrett MJ, Carlson JW, Micklem G, Celniker SE, et al.
Bayesian modelling of shared gene function.	2007	Bioinformatics	Sykacek P, Clarkson R, Print C, Furlong R, Micklem G
FlyMine: an integrated database for Drosophila and Anopheles genomics.	2007	Genome biology	Lyne R, Smith R, Rutherford K, Wakeling M, Varley A, et al.
Prospero acts as a binary switch between self-renewal and differentiation in Drosophila neural stem cells.	2006	Developmental cell	Choksi SP, Southall TD, Bossing T, Edoff K, de Wit E, et al.
A friendly statistics package for microarray analysis.	2005	Bioinformatics	Sykacek P, Furlong RA, Micklem G
Regions of human chromosome 2 (2q32-q35) and mouse chromosome 1 show synteny with the pufferfish genome (Fugu rubripes).	1997	Genomics	Schofield JP, Elgar G, Greystrong J, Lye G, Deadman R, et al.
Sequence comparison of human and yeast telomeres identifies structurally distinct subtelomeric domains.	1997	Human molecular genetics	Flint J, Bates GP, Clark K, Dorman A, Willingham D, et al.
The relationship between chromosome structure and function at a human telomeric region.	1997	Nature genetics	Flint J, Thomas K, Micklem G, Raynham H, Clark K, et al.
The BRC repeats are conserved in mammalian BRCA2 proteins.	1997	Human molecular genetics	Bignell G, Micklem G, Stratton MR, Ashworth A, Wooster R
Molecular cloning of tissue-specific transcripts of a transketolase-related gene: implications for the evolution of new vertebrate genes.	1996	Genomics	Coy JF, Dübel S, Kioschis P, Thomas K, Micklem G, et al.
Identification of the breast cancer susceptibility gene BRCA2.	1995	Nature	Wooster R, Bignell G, Lancaster J, Swift S, Seal S, et al.
Comparative sequence analysis of the human and pufferfish Huntington's disease genes.	1995	Nature genetics	Baxendale S, Abdulla S, Elgar G, Buck D, Berks M, et al.
The sequence complexity of exons trapped from the mouse genome.	1994	Current biology	Nehls M, Pfeifer D, Micklem G, Schmoor C, Boehm T
Dissecting the temporal requirements for homeotic gene function.	1994	Development	Castelli-Gair J, Greig S, Micklem G, Akam M
Structure and expression of the Huntington's disease gene: evidence against simple inactivation due to an expanded CAG repeat.	1994	Somatic cell and molecular genetics	Ambrose CM, Duyao MP, Barnes G, Bates GP, Lin CS, et al.
Yeast origin recognition complex is involved in DNA replication and transcriptional silencing.	1993	Nature	Micklem G, Rowley A, Harwood J, Nasmyth K, Diffley JF
A yeast silencer contains sequences that can promote autonomous plasmid replication and transcriptional activation.	1987	Cell	Brand AH, Micklem G, Nasmyth K